casedugr/knowseq-shiver repository overview

KnowSeq Shiver is the shiny-based web application of the KnowSeq R/Bioc package that allows users with no previous knowledge of programming to analyze transcriptomics data using all the functionalities available at KnowSeq.

Citation: Castillo-Secilla, D., Gálvez, J. M., Carrillo-Pérez, F., Verona-Almeida, M., Redondo-Sánchez, D., Ortuno, F. M., Herrera, L. J. & Rojas, I. (2021). KnowSeq R-Bioc package: The automatic smart gene expression tool for retrieving relevant biological knowledge. Computers in Biology and Medicine, 133, 104387.

KnowSeq Shiver is currently available at https://knowseqshiver.shinyapps.io/KnowSeq-ShiVer/⁠

Furthermore, if you want to take advantage of your own hardware, there is a Docker image available to deploy KnowSeq ShiVer in local without restriction.

Motivation: The challenges of precision medicine must be faced to achieve the paradigm shift. One of these important challenges is the development of tools with the capability of exploiting biological data to infer or extract new and relevant knowledge, and to bring these tools closer to researchers, physicians and other non-technical users.

Results: We develop KnowSeq Shiver, an interactive web-application based on KnowSeq (R/Bioconductor package) that performs transcriptomic analysis with machine learning algorithms. This online tool is implemented using R and Shiny, and it’s oriented to users with no previous knowledge of programming.