caspargross/hybridassembly repository overview

⁠Hybrid Assembly Pipeline

Nextflow pipeline for hybrid and long read only Assembly. This pipeline combines different assembly methods and tools and allows for a direct comparison of the results. It is mainly suited for bacterial genomes and was created to identify plasmids in combination with PlasmIdent⁠

⁠Documentation:

• Requirements⁠
• Installation⁠
• Input format preaparation⁠
• Running the pipeline⁠
• Configuration parameters⁠
• Output files⁠