cbarnett/rocker_bioinformatics repository overview

⁠rocker_bioinformatics

a mod of rocker with additional bioinf libraries

⁠Info on the image on which this is based

https://hub.docker.com/r/rocker/tidyverse/⁠

⁠Starting up the image

More info here https://github.com/rocker-org/rocker/wiki/Using-the-RStudio-image⁠

sudo docker run -d -p 8787:8787 cbarnett/rocker_bioinformatics

⁠start with volume share example

export SHAREDIR="/scratch/cbarnett/docker/rocker-share"
mkdir -p $SHAREDIR
pushd $SHAREDIR
sudo docker login
sudo docker run -d -p 8787:8787 -v $SHAREDIR:/home/rstudio/foo -e USERID=$UID cbarnett/rocker_bioinformatics

⁠Permissions and volume sharing

https://github.com/rocker-org/rocker/wiki/Sharing-files-with-host-machine⁠

⁠clearing old containers

!!! warning, prunes all old containers/volumers - a dangerous thing!

echo "DANGER" docker container prune
echo "DANGER" docker volumes prune