cbgr/cobind repository overview

⁠COBIND - a pipeline to discover co-binding motifs de novo

2024 February 25

⁠About

COBIND is the pipeline to identify the co-binding patterns in the proximity of reference regions or sequences. The tool uses coordinates of reference regions (anchors) in BED format or nucleotide sequences that contain reference in the center and surrounding sequences where to look for co-bindign patterns. The pipeline returns discovered patterns with information about in how many datasets they were found and how many spacers are between the anchor and discovered pattern.

⁠How to run the code?

This container contains necessary software to run the Snakemake-based pipeline. To download the pipeline code and see instructions and examples how to run, clone this repository⁠.

⁠Contact

In case you have any questions related to this pipeline, please contact the following persons: