cbgr/superenhancer_calling repository overview

⁠BRCAGE pipeline: postprocessing

2026 March 6

⁠About

This is a docker container for the calling superenhancers from enhancer expression data. Additional dependencies are added as defined in the requirements file here⁠. A list for the 0.1.0 version:"optparse", "NMF", "cluster", "uwot", "pheatmap","doParallel","mclust","aricode","topicmodels","pathviewr","ggplot2", "GenomicFeatures", "GenomicRanges", "ensembldb".

⁠How to run the code?

Please refer to the scripts⁠ and snakefile⁠.

⁠Contact

If you have any issues or doubts, please contact one of the following people: