cbica/nichart repository overview

This repository contains NiChart from the Center for Biomedical Image Computing and Analytics at the University of Pennsylvania. For more information, visit https://neuroimagingchart.com⁠ or our GitHub at https://github.com/CBICA/NiChart_Project⁠ .

The cloud version of NiChart is available at https://cloud.neuroimagingchart.com/⁠. This container lets you easily run your own local front-end of NiChart, so that you can use it from your computer without the need to transfer data over the internet.

This container can also automatically install all NiChart tools on your machine via Docker without need for complicated installation steps or dependency management.

Please see our installation instructions⁠ for details.

If you're looking for the individual NiChart structural tools, please see their individual repos:

NiChart_DLMUSE⁠ (GitHub⁠) - Fast brain segmentation via deep learning

NiChart_DLWMLS⁠ (GitHub⁠) - Fast white matter lesion segmentation via deep learning

SPARE scores⁠ (GitHub⁠) - ML-based prediction/scoring for variables of clinical interest

CCL-NMF prediction⁠ (GitHub⁠) - Lightweight estimation of CCL-NMF loading coefficients

ComBatFam Harmonization⁠ (GitHub⁠) - Dataset harmonization tools

SurrealGAN / PredCRD⁠ (GitHub⁠) - Predict continuous representation of disease along 5 principal dimensions