cbiitss/comets repository overview

⁠Tags

base (applications/cbiitss/comets/comets-base.c7.dockerfile)⁠

⁠Description

This image contains the deployment environment for COMETS⁠. The deployment procedure may look something like this:

• Clone the comets/common resources repositories git clone https://github.com/CBIIT/nci-webtools-comets-analytics /tmp/comets_analytics git clone https://github.com/CBIIT/R-cometsAnalytics /tmp/comets_package git clone https://github.com/CBIIT/nci-analysis-tools-web-presence.git /tmp/web_presence

• Copy the application files to a local deployment directory sudo mkdir -p /local/comets/app /local/comets/logs sudo chown -R `id -u`:`id -g` /local/comets cp -r /tmp/comets_analytics/comets/* /local/comets/app/ cp -r /tmp/comets_package/* /local/comets/app/rcode/ cp -r /tmp/web_presence/common /local/comets/app/

• Pull the latest image and start a new container docker pull cbiitss/comets:base

docker run \
  --detach \
  --name comets \
  --publish 8000:8000 \
  --user `id -u`:`id -g` \
  --volume /etc/localtime:/etc/localtime:ro \
  --volume /local/comets/:/deploy/ \
  cbiitss/comets

docker exec --user root comets bash -c "R CMD INSTALL /deploy/app/rcode > /deploy/logs/InstallCometsPackage.log" docker restart comets

COMETS is now running on localhost:8100