ccplabwustl/catcorr repository overview

⁠CatCorr

This container is developed by the Cognitive Control & Psychopathology Laboratory at Washington University St. Louis to Concatenate and Correlate the 1D time series output of XCP-engine.

It will output:
1.) The concatenated timeseries.
2.) The transposed timeseries.
3.) The .net correlation file.

This program can be used on one or more files.(but why use one???)

⁠Installation:

First you will want to Download the container using either singularity or docker

⁠Download the container using docker:

docker pull ccplabwustl/catcorr:latest

⁠Download the container using singularity:

singularity build catcorr.simg docker://ccplabwustl/catcorr:latest

This will create a singularity image name catcorr.simg in the location you are currently in.

⁠Usage

⁠Example:

singularity \
run -B /data/nil-bluearc/ccp-hcp/CCPLinux2testing/fmriprep-1.3.2/sub-150423/derivatives/xcp_output/sub-150423/ses-wave1bas/task-Rest:/mnt/mydata \   
/data/nil-bluearc/ccp-hcp/SingularityImages/catcorr-04-08-19.simg \   
--inputFiles /mnt/mydata/task-Rest/run-1/fcon/schaefer400/sub-150423_ses-wave1bas_task-Rest_run-1_schaefer400.net /mnt/mydata/task-Rest/run-1/fcon/schaefer400/sub-150423_ses-wave1bas_task-Rest_run-2_schaefer400.net \   
--outputDir /mnt/mydata \

⁠Explain:

--inputFiles (Required) should be a list of *_ts.1D files space separated.
--outputDir (Required) This is where you would like your output to be located.