cgwyx/easymicrobiomer repository overview

Quick start
1.Install Docker

2.Run container with Bioconductor and RStudio

docker run /
-v /mnt/p1:/p1 /
-e PASSWORD=micro /
-p 8888:8787 /
cgwyx/easymicrobiomer:latest

This command will run the docker container cgwyx/easymicrobiomer:latest on your local machine.-v to mount an additional volume to the docker image

RStudio will be available on your web browser at http://localhost:8888⁠. The USER is fixed to always being rstudio. The password in the above command is given as bioc but it can be set to anything. 8787 is the port being mapped between the docker container and your host machine. NOTE: password cannot be rstudio.

The user is logged into the rstudio user by default.