[{"_1":2,"_183":-5,"_184":-5},"loaderData",{"_3":4,"_17":18,"_25":26,"_162":163},"root",{"_5":-5,"_6":-7,"_7":8,"_9":-7,"_10":11,"_12":-7,"_13":14,"_15":16},"currentUser","primaryEmail","siteVerification","6LeIxAcTAAAAAJcZVRqyHh71UMIEGNQ_MXjiZKhI","toast","enableDev",false,"incidentStatus","theme","system","contrast","normal","routes/_layout",{"_19":-5,"_20":21,"_22":21,"_23":11,"_24":21},"username","isAskGordonEnabled",true,"isUsingNewTemplate","showMinimalLanding","showHoneypotTrap","routes/_layout.r.$namespace.$reponame",{"_27":28,"_29":-5,"_30":11,"_31":11,"_32":33,"_34":35,"_36":-5,"_37":11,"_38":39,"_88":89,"_111":112,"_150":-5,"_151":11,"_152":21,"_153":11,"_154":11,"_155":-5,"_156":11,"_157":-5,"_158":159,"_160":113,"_161":-7},"canonicalUrl","https://hub.docker.com/r/chembl/beaker/tags","mcpServer","canSeeDockerfile","canSeeAutobuilds","namespace","chembl","reponame","beaker","cloudBuildSource","isAutobuildsAvailable","repo",{"_40":41,"_42":43,"_45":46,"_47":48,"_49":11,"_50":51,"_52":53,"_54":55,"_57":35,"_32":33,"_58":59,"_60":44,"_61":62,"_63":62,"_64":65,"_66":-5,"_67":68,"_69":70,"_71":11,"_72":33,"_73":74,"_79":11,"_80":81,"_85":33,"_86":87},"categories",[],"content_types",[44],"image","date_registered","2019-09-19T12:43:15.078816Z","description","","is_private","last_updated","2021-07-09T12:31:30.050219Z","last_modified","2024-10-16T13:48:34.145251Z","media_types",[56],"application/vnd.docker.container.image.v1+json","name","pull_count",411,"repository_type","star_count",1,"status","status_description","active","source","collaborator_count",0,"full_description","chembl_beaker\n======\n\n.. image:: https://img.shields.io/pypi/status/chembl_beaker.svg\n :target: https://pypi.python.org/pypi/chembl_beaker/\n :alt: Development Status\n\n.. image:: https://img.shields.io/pypi/l/chembl_beaker.svg\n :target: https://pypi.python.org/pypi/chembl_beaker/\n :alt: License\n \nWhat is Beaker?\n--------\n\nThis is chembl_beaker package developed at `ChEMBL `_ group, `EMBL-EBI `_, Cambridge, UK.\n\nThis is wrapper for `RDKit `_ which exposes following methods:\n\n * `Format convertion `_\n * `Vector image (SVG) generation, including Similarity Maps `_\n * `Descriptors `_\n * `Maximum Common Substructure `_\n * `Structural alerts `_\n * `ChEMBL Structure Pipeline `_\n * Marvin 4 JS compilant `webservices `_\n\nAs a portable, lightweight, `CORS `_-ready, `REST `_-speaking, `SPORE `_-documented webserver. This particular implementation wraps RDKit in `Bottle `_ on `Tornado `_.\n\nWhere is it used?\n--------\n\nIt can be used as web service backend for `Marvin For Java Script `_ as it exposes methods compatible with it's webservice `specification `_.\nTo do this you need to configure marvin sketcher instance:\n\n::\n\n marvin.sketcherInstance = new marvin.Sketch(\"sketch\");\n marvin.sketcherInstance.setServices(getDefaultServices({\n 'clean2dws' : ,\n 'molconvertws' : ,\n \"stereoinfows\" : \n }));\n\nUsage\n--------\n\nThe best way is to use Docker::\n\n docker run -p 5000:5000 chembl/beaker\n\nopen http://127.0.0.1:5000/docs\n\nConfiguration\n--------\nBy default configuration is stored in ``beaker.conf`` file, located in current directory. You can specify location of\nconfiguration file using ``--config (-c)`` parameter when running beaker. Configuration file format is standard ``*.ini``.\nBeaker is distributed with example configuration file named ``beaker.conf.sample``.\n\n * **debug** - run bottle server in debug mode (True/False, default ``True``)\n * **bottle_port** - number of port on which Bottle server is listening for connections (integer, default ``8080``)\n * **bottle_host** - hostname of Bottle server (string, default ``localhost``)\n * **server_middleware** - networking middleware library used by Bottle (string, default ``tornado``)\n * **enable_cors** - enable CORS plugin and respect all header settings below (True/False, default ``True``) \n * **access_control_allow_origin** - content of 'Access-Control-Allow-Origin' header send with every response (string, default ``*``)\n * **access_control_allow_methods** - content of 'Access-Control-Allow-Methods' header send with every response (string, default ``GET, POST, PUT, OPTIONS``)\n * **installed_apps** - apps installed in beaker, default to [\n \"beaker\",\n \"beaker.core_apps.autoDocs\",\n \"beaker.core_apps.conversions\",\n \"beaker.core_apps.descriptors\",\n \"beaker.core_apps.marvin\",\n \"beaker.core_apps.mcs\",\n \"beaker.core_apps.rasterImages\",\n \"beaker.core_apps.svgImages\",\n \"beaker.core_apps.similarityMaps\",\n \"beaker.core_apps.standardisation\",\n ]\n\nDocumentation\n--------\nLike every good software written in Python, beaker is self-documented. When you run beaker, open your browser and go to URL: ``BEAKER_ROOT/docs``. You will see live documentation genrated on the fly from all available webservices, exposed by beaker. You can immediately try them and see results return by the server. Every webservice should be documented - documentation is generated automatically as well, from docstring of every exposed webservice, interpreted as markdown.\n\nDevelopment - writing your own extentions\n--------\nDeveloping new app should be easy. The only required file is ``views.py`` where you should define your botte ``routes``. \n","has_starred","hub_user","immutable_tags_settings",{"_75":11,"_76":77},"enabled","rules",[78],".*","is_automated","permissions",{"_82":21,"_83":11,"_84":11},"read","write","admin","user","storage_size",13017118196,"orgData",{"_90":91,"_92":93,"_94":95,"_96":33,"_97":98,"_99":100,"_101":98,"_102":103,"_104":105,"_106":107,"_108":48,"_109":48,"_110":21},"id","23f713110a894684b91d44ea3da58bc2","uuid","23f71311-0a89-4684-b91d-44ea3da58bc2","type","organization","orgname","full_name","ChEMBL","location","Hinxton, UK","company","profile_url","https://www.ebi.ac.uk/chembl/","date_joined","2015-07-14T08:51:43.664523Z","gravatar_url","https://www.gravatar.com/avatar/990a94a8f9b50b3bb7e68edc6d88b44f?s=80&r=g&d=mm","gravatar_email","badge","is_active","recentTags",[113],{"_114":44,"_115":116,"_117":118,"_90":119,"_120":121,"_50":138,"_139":116,"_140":141,"_142":56,"_57":143,"_144":145,"_146":129,"_147":138,"_148":65,"_149":21},"content_type","creator",4977489,"full_size",1305775758,69386496,"images",[122],{"_123":124,"_125":126,"_127":48,"_128":129,"_130":131,"_132":133,"_134":48,"_135":-5,"_136":118,"_63":65,"_137":-5},"architecture","amd64","digest","sha256:358dc09dad76052946fc99fa74324729009e57fe6c189b92b1329bb99f3a3640","features","last_pulled","2026-10-16T08:19:24.16230958Z","last_pushed","2021-07-09T12:31:30Z","os","linux","os_features","os_version","size","variant","2021-07-09T12:31:29.742852Z","last_updater","last_updater_username","eloyfelix","media_type","latest","repository",7725075,"tag_last_pulled","tag_last_pushed","tag_status","v2","sbxKitMetadata","isPotentialSpam","isHubSbxKitsEnabled","showSbxRunInCloud","showSbxLogoOverride","sbxTrademarkText","displaySecurityMetadata","tagAttestations","tagsHaveAttestations",[],"selectedTag","attestationsUrl","routes/_layout.r.$namespace.$reponame.tags",{"_38":164,"_171":172,"_158":181,"_182":11},{"_40":165,"_42":166,"_45":46,"_47":48,"_49":11,"_50":51,"_52":53,"_54":167,"_57":35,"_32":33,"_58":59,"_60":44,"_61":62,"_63":62,"_64":65,"_66":-5,"_67":68,"_69":70,"_71":11,"_72":33,"_73":168,"_79":11,"_80":170,"_85":33,"_86":87},[],[44],[56],{"_75":11,"_76":169},[78],{"_82":21,"_83":11,"_84":11},"tags",{"_173":62,"_174":-5,"_175":-5,"_176":177},"count","next","previous","results",[178],{"_114":44,"_115":116,"_117":118,"_90":119,"_120":179,"_50":138,"_139":116,"_140":141,"_142":56,"_57":143,"_144":145,"_146":129,"_147":138,"_148":65,"_149":21},[180],{"_123":124,"_125":126,"_127":48,"_128":129,"_130":131,"_132":133,"_134":48,"_135":-5,"_136":118,"_63":65,"_137":-5},[],"canDeleteTags","actionData","errors"]

chembl/beaker

Tags for chembl/beaker