chizhou/itunes repository overview

Usage:

1. Pull image from dockerhub: docker pull chizhou/itunes

2. Run the image with interactive mode with your dataset: docker run -it -v /your/path/to/data/:/home/bioworker chizhou/itunes /bin/bash

3. Change directory into /home/bioworker/project/iTunes: cd /home/bioworker/project/iTunes

4. Download reference data: bash data_download.sh

5. edit example.yaml and fill the exome and RNA sequencing data path with proper filepath:

6. Run the program with follow command: python iTunes.py PairMatchDna -i example.yaml

Other information about iTunes, please refer to

1. iTunes Github repository (https://github.com/bm2-lab/iTunes⁠)
2. citation iTunes: identification of personalized Tumor neoantigens from next-generation sequencing data, Submitted, 2018.