chrishah/cegma repository overview

⁠cegma-docker

Docker image to run CEGMA in Ubuntu 14.04

The image contains a full install of CEGMA⁠, including all necessary dependencies. I am not part of the developer team - I just made this image.

In detail, the image is set up with:

• Ubuntu 14.04
• genewise 2.4.1
• geneid 1.4.4
• ncbi-blast+ 2.2.28+
• CEGMA 2.5

To run CEGMA you can do the following (this will mount the directory /in of the container to the current working directory on your local machine, and allow you to access files in this directory and any sub-directories):

$ docker run --rm -v $(pwd):/in -w /in chrishah/cegma:2.5 cegma -h

You can also enter the container environment and work within it. All executables should be in the PATH.

$ docker run -it --rm -v $(pwd):/in -w /in chrishah/cegma:2.5 /bin/bash