codingene/bioshiner repository overview

⁠BioShineR

Containerize Bioconductor and Shiny with DockeR

This serves as a base image to deploy a R Shiny⁠ application with Shiny-Server⁠ including some basic Bioconductor⁠ packages.

⁠Whats the need?

Rocker-Project⁠ is already have a very nice rocker/shiny⁠ on Debian, But few dependency are missing while installing few R and Bioconductor packages.

Anyway this codingene/bioshiner⁠ made on top of rocker/shiny⁠ only and loosely follow the same principles⁠.

⁠Principles

• Image tags will represnt corresponding Bioconductor relese versions⁠

  For example to use Bioconductor 3.11

  docker pull codingene/bioshiner:3.11
  

  Copy

⁠All Tags

⁠Test

Clone this repository containing test app

git clone https://github.com/codingene/BioShineR

Run the app

docker run --rm -p 3838:3838 \
	-v ${PWD}/BioShineR/test/apps/biocmanager:/srv/shiny-server/ \
	-v /srv/shinylog/:/var/log/shiny-server/ \
	codingene/bioshiner:3.11

Open the app in browser: http://localhost:3838/⁠