cplaisier/ccaf repository overview

We facilitate the use of ccAF by providing a Docker Hub container cplaisier/ccaf which has all the dependencies and libraries required to run the ccAF classifier. To see how the Docker container is configured please refer to the Dockerfile. Please install Docker and then from the command line run:

docker pull cplaisier/ccaf

Then run the Docker container using the following command (replace with the directory where you have the scRNA-seq data to be classified):

docker run -it -v '<path to scRNA-seq profiles directory>:/files' cplaisier/ccaf

This will start the Docker container in interactive mode and will leave you at a command prompt. You will then want to change directory to where you have your scRNA-seq or transcriptome profiling data.