Open-Source Programs for 16S analysis
967
Includes programs from cwarden45/genomics-base as well as:
mothur (v1.38.0, set in $PATH) RDPclassifier (2.11, /opt/rdp_classifier_2.11/dist/classifier.jar) QIIME (v1.9.1, configured enough to run join_paired_ends.py, split_libraries_fastq.py, and assign_taxonomy.py) --> RDPclassifier (v2.2, configured for QIIME) --> legacy BLAST (v2.2.22, in addition to BLAST+) --> ea-utils --> SeqPrep biopython (v1.68, set in $PATH)
Content type
Image
Digest
Size
1.9 GB
Last updated
almost 10 years ago
docker pull cwarden45/metagenomics