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cwarden45/metagenomics

By cwarden45

•Updated almost 10 years ago

Open-Source Programs for 16S analysis

Image
0

967

cwarden45/metagenomics repository overview

Includes programs from cwarden45/genomics-base as well as:

mothur (v1.38.0, set in $PATH) RDPclassifier (2.11, /opt/rdp_classifier_2.11/dist/classifier.jar) QIIME (v1.9.1, configured enough to run join_paired_ends.py, split_libraries_fastq.py, and assign_taxonomy.py) --> RDPclassifier (v2.2, configured for QIIME) --> legacy BLAST (v2.2.22, in addition to BLAST+) --> ea-utils --> SeqPrep biopython (v1.68, set in $PATH)

Tag summary

Content type

Image

Digest

Size

1.9 GB

Last updated

almost 10 years ago

docker pull cwarden45/metagenomics