cwarden45/rnaseq-dependencies repository overview

Includes programs from cwarden45/genomics-base as well as:

cmake (v3.5.1) pip (v8.1.1) cython (v0.24) pysam (v0.9.1.2) biopython (v1.68) RSeQC (v2.6.4, python functions set in $PATH) QoRTs (v1.1.8, /opt/QoRTs/QoRTs_1.1.6/QoRTs.jar) Bowtie2 (v2.2.9, set in $PATH) Tophat2 (v2.1.1, set in $PATH) HT-Seq (v0.6.0., htseq-count in $PATH) STAR (v2.5, binaries for STAR and STARlong in /opt/STAR/bin/Linux_x86_64 or /opt/STAR/bin/Linux_x86_64_static) RSEM (v1.2.31, in /opt/RSEM) Salmon (v0.6.0, in /opt/salmon/bin/salmon)