cyversevice/rstudio-geospatial repository overview

⁠rstudio-geospatial

Based on the Rocker-Project.org⁠ Docker RStudio geospatial container⁠ for CyVerse Discovery Environment (DE) data science workbench. CyVerse DE requires additional configuration files (e.g. nginx) to be compatible with our Condor and Kubernetes orchestration.

An Introduction to Rocker: Docker Containers for R⁠ Carl Boettiger and Dirk Eddelbuettel, The R Journal (2017) 9:2, pages 527-536. https://doi.org/10.32614/RJ-2017-065 ⁠

quick launch	size

⁠Instructions

⁠Run this Docker locally or on a Virtual Machine

To run these containers, you must first pull them from DockerHub

docker pull cyversevice/rstudio-geospatial:latest

docker run -it --rm -v /$HOME:/app --workdir /app -p 8787:80 -e REDIRECT_URL=http://localhost:8787 cyversevice/rstudio-geospatial:latest

The default username is rstudio and password is rstudio1. To reset the password, add the flag -e PASSWORD=<yourpassword> in the docker run statement.

⁠Build your own Docker container and deploy on CyVerse VICE

This container is intended to run on the CyVerse data science workbench, called VICE⁠.

Unless you plan on making changes to this container, you should just use the existing launch button above.

⁠Developer notes

To build your own container with a Dockerfile and additional dependencies, pull the pre-built image from DockerHub:

FROM cyversevice/rstudio-geospatial:latest

Follow the instructions in the VICE manual for integrating your own tools and apps⁠.