cyversevice/rstudio-ml repository overview

⁠rstudio-ml

RStudio with Machine Learning dependencies, based on Rocker RStudio ML Docker container⁠ for CyVerse VICE. VICE requires additional configuration files (e.g. nginx) to be compatible with our Condor and Kubernetes orchestration.

quick launch	tag	size	metrics	build

⁠Instructions

⁠Run this Docker locally or on a Virtual Machine

To run these containers, you must first pull them from DockerHub

docker pull cyversevice/rstudio-ml:latest

docker run -it --gpus all --rm -v /$HOME:/app --workdir /app -p 8787:80 -e REDIRECT_URL=http://localhost:8787 cyversevice/rstudio-ml:latest

The default username is rstudio and password is rstudio1. To reset the password, add the flag -e PASSWORD=<yourpassword> in the docker run statement.

⁠Build your own Docker container and deploy on CyVerse VICE

This container is intended to run on the CyVerse data science workbench, called VICE⁠.

Unless you plan on making changes to this container, you should just use the existing launch button above.

⁠Developer notes

To build your own container with a Dockerfile and additional dependencies, pull the pre-built image from DockerHub:

FROM cyversevice/rstudio-ml:latest

Follow the instructions in the VICE manual for integrating your own tools and apps⁠.