danylmb/bvbrc repository overview

⁠BVBRC Command Line Interface Docker.

• BVBRC: https://www.bv-brc.org/⁠
• GitHub: https://github.com/BV-BRC⁠
• Dockerfile: https://github.com/JCVenterInstitute/CAMRA/blob/main/Dockerfiles/BVBRC/BVBRC.Dockerfile⁠
• BVBRC CLI tutorial: https://www.bv-brc.org/docs/cli_tutorial/index.html⁠
• BVBRC CLI commands: https://www.bv-brc.org/docs/cli_tutorial/command_list/index.html⁠

⁠Use

• Get Docker Image: docker pull danylmb/bvbrc:1.040
• Run Docker Image: docker run -v <local path>:/data danylmb/bvbrc:1.040 <BVBRC CLI command>
• Run Docker Image Interactively: docker run -v <local path>:/data -it danylmb/bvbrc:1.040 bash
• Test Docker Image: docker run danylmb/bvbrc:1.040 p3-login -h
• Test expected output:

p3-login.pl [-hsv] [long options...] username
        --logout           log out of BV-BRC
                           aka --logoff
        --status (or -s)   display login status
                           aka --whoami
        --rast             create a RAST login token
        --verbose (or -v)  display debugging info
        --help (or -h)     display usage information```