danylmb/hamronize repository overview

⁠hAMRonization

• Github: https://github.com/pha4ge/hAMRonization⁠
• Dockerfile: https://github.com/JCVenterInstitute/CAMRA/tree/main/Dockerfiles/HAMRONIZATION⁠

This repo contains the hAMRonization module and CLI parser tools combine the outputs of 18 (as of 2022-09-25) disparate antimicrobial resistance gene detection tools into a single unified format.

This is an implementation of the hAMRonization AMR detection specification scheme⁠ which supports gene presence/absence resistance and mutational resistance (if supported by the underlying tool).

This supports a variety of summary options including an interactive summary⁠.