danylmb/resfinder repository overview

⁠Resfinder

• Dockerfile: https://github.com/JCVenterInstitute/CAMRA/tree/main/Dockerfiles/RESFINDER4.5.0⁠
• ResFinder documentation: https://bitbucket.org/genomicepidemiology/resfinder/src/master/⁠
• ResFinder web-service: https://cge.food.dtu.dk/services/ResFinder/⁠.
• ResFinder software repository: https://bitbucket.org/genomicepidemiology/resfinder.git⁠.
• ResFinder database repository: https://bitbucket.org/genomicepidemiology/resfinder_db.git⁠.
• PointFinder database repository: https://bitbucket.org/genomicepidemiology/pointfinder_db.git⁠.

ResFinder identifies acquired antimicrobial resistance genes in total or partial sequenced isolates of bacteria.

ResFinder 4.0 for predictions of phenotypes from genotypes. Bortolaia V, Kaas RS, Ruppe E, Roberts MC, Schwarz S, Cattoir V, Philippon A, Allesoe RL, Rebelo AR, Florensa AR, Fagelhauer L, Chakraborty T, Neumann B, Werner G, Bender JK, Stingl K, Nguyen M, Coppens J, Xavier BB, Malhotra-Kumar S, Westh H, Pinholt M, Anjum MF, Duggett NA, Kempf I, Nykasenoja S, Olkkola S, Wieczorek K, Amaro A, Clemente L, Mossong J, Losch S, Ragimbeau C, Lund O, Aarestrup FM. Journal of Antimicrobial Chemotherapy. 2020 Aug 11. PMID: 32780112 doi: 10.1093/jac/dkaa345