dataintuitive/viash repository overview

⁠viash: from scripts to pipelines

viash helps you turn a script (Bash/R/Python/Scala/JavaScript) into a reusable component. By providing some meta-data regarding its functionality and the platform on which you want to run the software, viash can help you:

• wrap your script in an executable with a CLI and –help functionality,
• seamlessly execute your component natively on the host platform or in a Docker container
• combine multiple components in a Nextflow pipeline, and
• unit-test your component to ensure that it works at all times.

⁠Documentation

The viash documentation is available online at www.data-intuitive.com/viash_docs⁠:

• Getting started with viash⁠
• Information on viash commands⁠
• Information on config files⁠
• Good practices with viash⁠
• Version history of viash⁠

⁠License

Copyright (C) 2020 Data Intuitive

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/⁠.