dcanumn/external-software-nhp-synth repository overview

⁠External Software for DCAN Labs nhp-abcd-bids-pipeline-synth.

The repository contains the Dockerfile to create a Docker image of external software packages used by the DCAN nhp-abcd-bids-pipeline-synth pipeline. Notice that there is no entry point for this container.

⁠Installation

In order to run this software via a container, you will need to acquire a copy of the FreeSurfer License for yourself from:

Follow this link for a FreeSurfer License⁠

⁠Using Docker

Before running, you will need to load the image onto your Docker service by running the following command:

docker pull dcanumn/external-software-nhp-synth

If you receive a "no space left on device" error during this pull process, you may need to clean up any old/dangling images and containers from the docker registry, and possibly increase the amount of space allocated to Docker.

⁠Using Singularity

You can either pull the image from the Docker repository or build it from the repository for the image to be saved in the working directory:

singularity pull docker://dcanumn/external-software-nhp-synth

singularity build external-software.img docker://dcanumn/external-software-nhp-synth

These are essentially the same, but in the latter case you have control over the name of the file.