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deepbase/dockerlab

By deepbase

•Updated about 2 years ago

Image
0

2.2K

deepbase/dockerlab repository overview

⁠Dockerlab pre-built images

The table below lists the pre-built images for different versions of Ubuntu and CUDA. You can use these images directly without building them yourself.

NameDescriptionDockerfile
workspace_baseImage includes:
  • Ubuntu 22.04
  • Miniconda (Python 3.10)
  • ZSH (Oh-My-ZSH)
  • Docker (docker in docker)
  • Tmux (tmux-config)
  • Common used fonts for plotting
    • Arial (recommended)
    • Helvetica
    • Palatino Linotype
    • Times New Roman
Dockerfile⁠
workspace_cuda_11_1Image includes:
  • Ubuntu 20.04
  • CUDA 11.1.1
  • cuDNN 8
  • Miniconda (Python 3.8)
  • ZSH (Oh-My-ZSH)
  • Docker (docker in docker)
  • Tmux (tmux-config)
  • Common used fonts for plotting
    • Arial (recommended)
    • Helvetica
    • Palatino Linotype
    • Times New Roman
Dockerfile⁠
workspace_cuda_11_3Image includes:
  • Ubuntu 20.04
  • CUDA 11.3.1
  • cuDNN 8
  • Miniconda (Python 3.8)
  • ZSH (Oh-My-ZSH)
  • Docker (docker in docker)
  • Tmux (tmux-config)
  • Common used fonts for plotting
    • Arial (recommended)
    • Helvetica
    • Palatino Linotype
    • Times New Roman
Dockerfile⁠
workspace_cuda_11_7Image includes:
  • Ubuntu 22.04
  • CUDA 11.7.1
  • cuDNN 8
  • Miniconda (Python 3.10)
  • ZSH (Oh-My-ZSH)
  • Docker (docker in docker)
  • Tmux (tmux-config)
  • Common used fonts for plotting
    • Arial (recommended)
    • Helvetica
    • Palatino Linotype
    • Times New Roman
Dockerfile⁠
workspace_cuda_11_8Image includes:
  • Ubuntu 22.04
  • CUDA 11.8.0
  • cuDNN 8
  • Miniconda (Python 3.10)
  • ZSH (Oh-My-ZSH)
  • Docker (docker in docker)
  • Tmux (tmux-config)
  • Common used fonts for plotting
    • Arial (recommended)
    • Helvetica
    • Palatino Linotype
    • Times New Roman
Dockerfile⁠
workspace_cuda_12_1Image includes:
  • Ubuntu 22.04
  • CUDA 12.1.1
  • cuDNN 8
  • Miniconda (Python 3.10)
  • ZSH (Oh-My-ZSH)
  • Docker (docker in docker)
  • Tmux (tmux-config)
  • Common used fonts for plotting
    • Arial (recommended)
    • Helvetica
    • Palatino Linotype
    • Times New Roman
Dockerfile⁠
workspace_pytorch_1_13Image includes:
  • Ubuntu 22.04
  • CUDA 11.4.1
  • cuDNN 8
  • Miniconda (Python 3.10)
  • ZSH (Oh-My-ZSH)
  • Docker (docker in docker)
  • Tmux (tmux-config)
  • Common used fonts for plotting
    • Arial (recommended)
    • Helvetica
    • Palatino Linotype
    • Times New Roman
  • Pytorch 1.13.1
  • Pytorch Lightning 1.9.4
Dockerfile⁠
workspace_pytorch_2_0Image includes:
  • Ubuntu 22.04
  • CUDA 11.7.1
  • cuDNN 8
  • Miniconda (Python 3.10)
  • ZSH (Oh-My-ZSH)
  • Docker (docker in docker)
  • Tmux (tmux-config)
  • Common used fonts for plotting
    • Arial (recommended)
    • Helvetica
    • Palatino Linotype
    • Times New Roman
  • Pytorch 2.0
  • Pytorch Lightning 2.0.0
Dockerfile⁠
workspace_pytorch_2_1Image includes:
  • Ubuntu 22.04
  • CUDA 12.1.1
  • cuDNN 8
  • Miniconda (Python 3.10)
  • ZSH (Oh-My-ZSH)
  • Docker (docker in docker)
  • Tmux (tmux-config)
  • Common used fonts for plotting
    • Arial (recommended)
    • Helvetica
    • Palatino Linotype
    • Times New Roman
  • Pytorch 2.1.2
  • Pytorch Lightning 2.1.3
Dockerfile⁠
workspace_pytorch_2_1Image includes:
  • Ubuntu 22.04
  • CUDA 12.1.1
  • cuDNN 8
  • Miniconda (Python 3.10)
  • ZSH (Oh-My-ZSH)
  • Docker (docker in docker)
  • Tmux (tmux-config)
  • Common used fonts for plotting
    • Arial (recommended)
    • Helvetica
    • Palatino Linotype
    • Times New Roman
  • Pytorch 2.2.0
  • Pytorch Lightning 2.2.0
Dockerfile⁠
workspace_proteinImage includes:
  • Ubuntu 22.04
  • CUDA 11.1.1
  • cuDNN 8
  • Miniconda (Python 3.10)
  • ZSH (Oh-My-ZSH)
  • Docker (docker in docker)
  • Tmux (tmux-config)
  • Common used fonts for plotting
    • Arial (recommended)
    • Helvetica
    • Palatino Linotype
    • Times New Roman
  • FFindex
  • CCMpred
  • HH-suite3
  • HMMER
  • BLAST
  • MMseqs2
  • Align toools: Clustal-Omega, EMBOSS, ProbCons, Kalign 3
Dockerfile⁠
runtime_nodeImage includes:
  • Node LTS
  • yrm
Dockerfile⁠

Tag summary

Content type

Image

Digest

sha256:93d5ffcd7…

Size

5.8 GB

Last updated

about 2 years ago

docker pull deepbase/dockerlab:workspace_protein