developmentalimagingmcri/mcribs repository overview

Surface version of M-CRIB.

This software uses ANTs/antsJointFusion for voxel labeling and Deformable within MIRTK to perform cortical surface extraction. A customised Freesurfer-like pipeline is provided to perform cortical parcellation on the surfaces with M-CRIB compatible labelling schemes.

The paper is available at https://www.nature.com/articles/s41598-020-61326-2⁠

MIRTK was downloaded from https://github.com/BioMedIA/MIRTK⁠. A customised version is included in this repo.