dgarijo/delphi repository overview

Dockerfile: FROM python:3.6

RUN pip install flask

RUN pip install -e git+https://github.com/ml4ai/delphi.git#egg=delphils

WORKDIR /src/delphils

Running Delphi: Follow instructions from https://github.com/ml4ai/delphi⁠ In short:

Running the image: docker run --volume "PATH_TO_SHARED_FOLDER":/out/ -it dgarijo/delphi:v1

Creation of a model: root@59c89406cc39:/src/delphils# ./delphi.py --create_model --indra_statements data/sample_indra_statements.pkl --adjective_data data/adjectiveData.tsv --output_cag_json /out/testDelphiDanielJSON --output_dressed_cag /out/testDelphiDanielCAG --output_variables_path /out/testDelphiDanielVar

Execution of a model: root@59c89406cc39:/src/delphils# ./delphi.py --execute_model --input_dressed_cag /out/testDelphiDanielCAG --input_variables_path /out/testDelphiDanielVar --output_sequences /out/DelphiSequencesResult.csv