diffdocker/fbirnqa repository overview

This docker image was created by Dr. Chandana Kodiweera, MRI Physicist, Dartmouth Brain Imaging Center.

⁠Run the docker image

docker run fbirnqa:1.11.14 "input dir" "output dir"

steps to run the docker image:

1. docker pull diffdocker/fbirnqa:1.11.14

2. sudo docker run -it -v /path/to/input/data/:/input/ -v /path/to/output/data/fbirn_out/:/fbirn_out/ docker.io/diffdocker/fbirnqa:1.11.14 /input/ /fbirn_out/out (make sure /out does not exist prior to running the docker)

##Create a singularity container

singularity build fbirnqa-1.11.14.sif docker://diffdocker/fbirnqa:1.11.14

⁠Run using the singularity container

singularity run --cleanenv fbirnqa.sif "input dir" "output dir"

You may have to bind the data directory.