dktanwar/galaxy_chip-seq repository overview

⁠Galaxy_ChIP-Seq

This repo contains a .yml file and a Dockerfile.

• .yml: This file have all the required tools, which would be downloaded from Galaxy Project⁠
• Dockerfile: This docker file will install the ChIP-Seq flavoured galaxy on your computer.

⁠Tools included for data analysis:

1. FASTQC : to check the quality of fastq file.
2. Trimmomatic : to trip the adaptors and also to remove reads wit hlow quality.
3. bowtie2 : to align the samples to reference genome.
4. samtools : to convert sam files to bam format and also to sort & index bam files.
5. Picard tools : to mark the duplicated reads.