dmccloskey/sequencing_utilities repository overview

#sequencing_utilities

scripts for processing next generation sequencing data

##Douglas McCloskey

##Credits:

Ali Ebrahim for writing the original sequtil⁠ library from which this is derived

To install, please follow the instructions⁠.

###Project Goals:

1. Compilation of all open-source next generation sequencing packages in a single docker image for fast and pain-free deployment

2. Methods to run analyses on large batches of samples utilizing docker containers

3. Methods for distributing data across storage servers and compute servers utilizing docker containers

###TODO:

add/update .py main to include all function parameters

modify shell scripts to call .py main

add docker_run scripts to run breseq using Docker