dnastack/hifisolves-ingest repository overview

Scripts for uploading genomics data files and running PacBio's HumanWGS workflow, for use in the HiFi Solves Consortium.

Source repo⁠

⁠HiFi Solves Human WGS workflow runner

As part of the HiFi Solves Consortium⁠, organizations will run their sequencing data through PacBio's Human Whole Genome Sequencing (WGS) pipeline⁠.

This package handles uploading all required raw data to the organization's cloud, configures the required workflow metadata, and triggering a run of the HumanWGS workflow. Output files are automatically ingested into Publisher and made available on hifisolves.org⁠.