dockerxialab/ecoomicsanalyst repository overview

⁠EcoOmicsAnalyst: A unified framework for high-performance, high-resolution, and user-friendly RNA-seq profiling of non-model organisms.

⁠Introduction

Growing applications of RNA-seq in studies involving non-model organisms demand efficient transcriptome profiling and functional analysis, which has not been met using current de novo assembly and annotation approaches. We introduce the EcoOmicsAnalyst software suite to enable simultaneous identification and quantification directly from short reads through translated search against a high-resolution ortholog database.

Here we provide a Stand Alone docker version of EcoOmicsAnalyst (EcoOmicsAnalyst_SA) for users to avoid challenging data uploading to remote server.

⁠Guidance

Run this docker image using this command lines:

• docker pull dockerxialab/ecoomicsanalyst:latest - Pulling docker image
• docker run -ti --rm -p 8080:8080 -v /:/data dockerxialab/ecoomicsanalyst:latest - Docker running
• Access the application from your browser from http://localhost:8080/EcoOmicsAnalyst_SA⁠

⁠Video Tutorials

Please follow this video tutorial⁠.

⁠Example Data

You can download small example data here⁠.

⁠Support

There are some helpful tips here⁠. Please post on the EcoOmicsAnalyst topic in our OmicsForum⁠ with any questions or technical issues.