donishadsmith/neurocaps repository overview

⁠Overview

neurocaps is a Python package for performing Co-activation Patterns (CAPs) analyses on resting-state or task-based fMRI data (resting-state & task-based). CAPs identifies recurring brain states through k-means clustering of BOLD timeseries data.

neurocaps is most optimized for fMRI data preprocessed with fMRIPrep and assumes a BIDs compliant directory such as the example directory structures below:

⁠Docker

This docker image uses Ubuntu 22.04 as its base and includes an editable installation of neurocaps.

Recommended command to pull image:

docker pull donishadsmith/neurocaps && docker tag donishadsmith/neurocaps neurocaps

The image can be run as:

• An interactive bash session (default):

docker run -it neurocaps

• A Jupyter Notebook with port forwarding:

docker run -it -p 9999:9999 neurocaps notebook