duplexa/hictool-bam2matrix2 repository overview

Arguments : chromosome, binsize It assumes input hdf5 files are in /data/ and the output files go to the same directory. So, mount the data directory to /data/. hg19 assumed.

Run example (for chromosome 22 and 50kb bin): docker run -v /home/ec2-user/data:/data/:rw duplexa/hictool-bam2matrix2 22 50000