ebitraining/epactsgeneanalysis repository overview

⁠EPACTS - Efficient and Parallelizable Association Container Toolbox for Genetic Analysis of Population-based Association Studies (23rd to 27th September)

⁠What is EPACTS?

EPACTS is a versatile software pipeline to perform various statistical tests for identifying genome-wide association from sequence data through a user-friendly interface, both to scientific analysts and to method developer.s

⁠Docker container usage of this package

mkdir $HOME/DATA

docker run -it -d --rm --privileged -v $HOME/DATA:/home/training/DATA --device /dev/dri --privileged --name epactsgeneanalysis ebitraining/epactsgeneanalysis

⁠To resume using an container:

docker exec -it epactsgeneanalysis /bin/bash

⁠To build the container:

docker build -f ./Dockerfile -t epactsgeneanalysis .
docker tag epactsgeneanalysis ebitraining/epactsgeneanalysis:latest
docker push ebitraining/epactsgeneanalysis:latest

⁠Downloading and Installing EPACTS

You can clone the current snapshot of this repository to install as well

git clone https://github.com/statgen/EPACTS.git
cd EPACTS
cget install -DCMAKE_C_FLAGS="-fPIC" -DCMAKE_CXX_FLAGS="-fPIC" -f requirements.txt
mkdir build; cd build
cmake -DCMAKE_INSTALL_PREFIX=</path/to/install> -DCMAKE_TOOLCHAIN_FILE=../cget/cget/cget.cmake -DCMAKE_BUILD_TYPE=Release ..
make
make install

⁠EPACTS Documentation

The latest version of documentation of EPACTS can be found at http://genome.sph.umich.edu/wiki/EPACTS⁠

⁠Feedbacks

Feel free to contact Hyun Min Kang ([email protected]⁠) or joint EPACTS Google group (http://groups.google.com/group/epacts⁠) to ask questions about EPACTS