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elysheba/public-dodo

By elysheba

•Updated almost 6 years ago

Docker image of DODO Neo4j database

Image
2

140

elysheba/public-dodo repository overview

This docker image provides an image of the DODO (Dictionary of Disease Ontologies) graph database. It aims to provide a more complete mapping across the multitude of disease ontologies and a comprehensive way to explore and interact with disease and phenotype ontologies. It includes the ontologies listed below:

  • MonDO
  • EFO
  • DO
  • ICD11
  • MedGen
  • MeSH
  • HPO (phenotype ontology)
  • ClinVar

To download and load the image

gzip -d docker-ucb-public-dodo-20.04.2020.tar.gz
cat docker-ucb-public-dodo-20.04.2020.tar | docker load

Run the image

docker run -d \
--name public-dodo\
--restart always \
--publish=7476:7474 \
--publish=7689:7687 \
--env=NEO4J_dbms_memory_heap_initial__size=4G \
--env=NEO4J_dbms_memory_heap_max__size=4G \
--env=NEO4J_dbms_memory_pagecache_size=2G \
--env=NEO4J_dbms_query__cache__size=0 \
--env=NEO4J_cypher_min__replan__interval=100000000ms \
--env=NEO4J_cypher_statistics__divergence__threshold=1 \
--env=NEO4J_dbms_security_procedures_unrestricted=apoc.\\\* \
--env=NEO4J_dbms_directories_import=import \
--env NEO4J_AUTH=none\
elysheba/public-dodo:20.04.2020

Tag summary

Content type

Image

Digest

Size

460.1 MB

Last updated

almost 6 years ago

docker pull elysheba/public-dodo:27.10.2020