engbio/metadoon repository overview

⁠🧪 Metadoon

Metadoon is a user-friendly graphical interface and pipeline designed for processing and analyzing amplicon-based metagenomic data using tools like VSEARCH and R (with Phyloseq). It automates the workflow from FASTQ preprocessing to statistical visualization in R.

Official page and contact with the developers:
https://github.com/rdo-adan/Metadoon-Beta⁠

Quick Use with Docker.

Step 1: Pull the Metadoon image

docker pull biowalter/metadoon:1.0

Or you can run it directly and the pull is done automatically:

docker run -it --rm -e DISPLAY=$DISPLAY -v /tmp/.X11-unix:/tmp/.X11-unix -v path/to/input/files:/app engbio/metadoon:v1

From here on, follow the instructions available at https://github.com/rdo-adan/Metadoon-Beta⁠