etal/cnvkit repository overview

Command-line toolkit for copy number analysis from targeted DNA sequencing. See for details: http://cnvkit.readthedocs.io/⁠

Use this container to run the scripts bundled with the CNVkit package, primarily cnvkit.py:

docker run -it etal/cnvkit

Without arguments, the container by default will launch a Bash shell with the CNVkit scripts installed in the system path and ready to use.