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etheleon/blast2lca

By etheleon

•Updated over 8 years ago

Executable for MEGAN CE taxonomic (LCA) and functional assignment from blast tabbed format

Image
0

994

etheleon/blast2lca repository overview

Includes MEGAN CE version 6.8.12

WORKDIR=/path/2/your/workdir
DIAMONDOUTPUT=/path/2/query.m8
GI2TAXID=/export2/home/uesu/simulation_fr_the_beginning/data/classifier/gi2taxid.refseq.map
GI2KEGG=/export2/home/uesu/github/MEGAN/tools/gi2kegg.map

docker run --rm \
   -v $WORKDIR:/data \
   -v $DIAMONDOUTPUT:/data/diamond.m8 \
   -v $GI2KEGG:/data/gi2kegg \
   -v $GI2TAXID:/data/gi2taxid \
    etheleon/blast2lca:nr_gi_0_1

⁠Accenssion ID

For newer NR database following accession id instead of Genbank id, pull from the nr_acc_X_X tag. $GI2TAXID will point to the acc2taxid mapping file same for $GI2KEGG

Tag summary

Content type

Image

Digest

Size

1.3 GB

Last updated

over 9 years ago

docker pull etheleon/blast2lca