ethill/env_base repository overview

# Convenience packages
apt update
apt upgrade
apt install curl git g++ zlib1g-dev make bsdmainutils gawk bcftools libopenblas-base wget

# R installation
apt install --no-install-recommends software-properties-common dirmngr
wget -qO- https://cloud.r-project.org/bin/linux/ubuntu/marutter_pubkey.asc | sudo tee -a /etc/apt/trusted.gpg.d/cran_ubuntu_key.asc
add-apt-repository "deb https://cloud.r-project.org/bin/linux/ubuntu $(lsb_release -cs)-cran40/"
apt install --no-install-recommends r-base
add-apt-repository ppa:c2d4u.team/c2d4u4.0+

# Conda/Mamba installation
cd tmp
curl https://repo.anaconda.com/archive/Anaconda3-2021.11-Linux-x86_64.sh --output anaconda.sh
bash anaconda.sh
source ~/.bashrc
conda install -c conda-forge mamba