eturkes/transcriptomics-benchmarks repository overview

⁠Transcriptomics Benchmarks

⁠This analysis is a work-in-progress

A benchmarking of the many tools in the transcriptomics ecosystem

The up-to-date R Markdown HTML reports can be found here⁠. After downloading, they can be opened in a web browser.

In order to reproduce the report, prerequisite data must be downloaded from my Google Drive⁠. After downloading and unzipping, move the directory to the project root and rename it as gdrive.

A Docker image for this project is available from DockerHub⁠. This is the recommended way to reproduce and explore the project.

To run all scripts and generate an HTML report in the results directory, just run:

docker-compose run all

To open RStudio, run:

docker-compose up rstudio

It will be available in your web browser at the address localhost:8791⁠.