Packages and environment to deploy latest version of analycyte R packages.
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To run the analycyte GUI, use a Linux host with Docker installed.
This base image will enable you to install analycyte and a port for the shiny web service. The base image is run in interactive mode, otherwise a shiny server is executed.
docker run -it -p 3838:3838 eugloh/analycyte_base bash
Then it's essential to install the latest version of the analycyte packages.
R -e "
Sys.setenv(R_REMOTES_UPGRADE = 'never') # do not update packages from CRAN
remotes::install_gitlab('lohmann/analycyte.projects', host = 'https://gitcrcm.marseille.inserm.fr')
remotes::install_gitlab('lohmann/analycyte.utils', host = 'https://gitcrcm.marseille.inserm.fr')
remotes::install_gitlab('lohmann/analycyte', host = 'https://gitcrcm.marseille.inserm.fr')
"
Finally, launch the shiny process (with a log file).
R -e "options('shiny.port'=3838,shiny.host='0.0.0.0');library(analycyte);analycyte::run_app()" 2>&1 | tee 3838.log
Once done, exit the guest.
exit # or Ctrl-D
Content type
Image
Digest
sha256:db5c79761…
Size
1.2 GB
Last updated
almost 2 years ago
docker pull eugloh/analycyte_base