externelly/phylogenyz repository overview

⁠PhylogenyZ

A Docker container to run a simple phylogenetic tree building workflow.

⁠Download and run the Docker container

docker run -it externelly/phyloflow:latest

⁠Run the analysis

Copy the protein.fasta file to the mount/ folder.
All outputs will be saved in the mount/ folder, unless otherwise specified.

famsa protein.fasta protein.aln
clipkit protein.aln
iqtree2 -T 32 -s protein.aln.clipkit --alrt 1000 -B 1000

⁠TODO

• Write a Snakemake workflow using the Docker container
• Add package versions
• Add GitHub link to Dockerimage file