fanyucai1/biobase repository overview

DESeq2
edgeR
clusterProfiler
WGCAN
ggplot2
vegan
topGO
ComplexHeatmap
EnrichmentBrowser

/usr/bin/java

/usr/bin/python:
/usr/bin/pip2
    CNVkit-0.9.6 
    HTSeq-0.11.2 
    MySQL-python-1.2.5 
    PyVCF-0.6.8 
    PyYAML-5.1.2 
    RSeQC-2.6.6 
    backports-abc-0.5 
    backports.functools-lru-cache-1.5 
    biopython-1.74 
    bx-python-0.8.4 
    bz2file-0.98 
    click-7.0 
    configparser-3.8.1 
    cutadapt-1.16 
    cycler-0.10.0 
    decorator-4.4.0 
    future-0.17.1 
    futures-3.3.0 
    joblib-0.13.2 
    json5-0.8.5 
    kiwisolver-1.1.0 
    matplotlib-2.2.2 
    networkx-2.2 
    numpy-1.14.4 
    pandas-0.23.2 
    parse-1.12.1 
    parse2csv-0.1.4 
    pillow-6.1.0 
    pomegranate-0.11.1 
    pyfaidx-0.5.5.2 
    pyparsing-2.4.2 
    pysam-0.15.1 
    pysqlite-2.8.3 
    python-dateutil-2.8.0 
    pytz-2019.2 
    reportlab-3.5.23 
    scikit-learn-0.20.0 
    scipy-1.2.0 
    seaborn-0.8 
    singledispatch-3.4.0.3 
    six-1.12.0 
    subprocess32-3.5.4 
    tornado-5.1.1 
    wheel-0.33.6 
    xopen-0.8.1

/software/python3/Python-v3.7.0/bin/python3
/software/python3/Python-v3.7.0/bin/pip3
     CNVkit-0.9.6 
     PyVCF-0.6.8 
     PyYAML-5.1.2 
     RSeQC-3.0.0 
     bx-python-0.8.4 
     click-7.0 
     cutadapt-2.4 
     decorator-4.4.0 
     dnaio-0.3 
     edlib-1.3.4 
     future-0.17.1 
     joblib-0.13.2 
     networkx-2.3 
     parse-1.12.1 
     parse2csv-0.1.4 
     pillow-6.1.0 
     pomegranate-0.11.1 
     pyBigWig-0.3.17 
     pyfaidx-0.5.5.2 
     reportlab-3.5.23 
     scikit-learn-0.21.3 
     scipy-1.3.1 
     seaborn-0.9.0 
     tornado-6.0.3 
     wheel-0.33.6 
     xopen-0.8.1 

    /project/