flybase/harvdev-proforma-parser repository overview

⁠Harvdev Proforma Parser

⁠Requirements

• A clone of this repository.
• Appropriate config.cfg file with correct parameters (contact Harvdev for a copy).
• Access to an instance of Chado.

⁠Running the parser

Main command: src/app.py

Flags:

• -v Enable verbose mode
• -c Specify config file location
• -l Load type (test or production)
  • Using test will rollback any changes while production will commit them.
• -d Directory of proforma files to load.

Example commands:

• python3 src/app.py -v -c ../credentials/config.cfg -d ../proforma/input/ -l test

• python3 src/app.py -v -c ../credentials/config.cfg -d ../proforma/input/ -l production

Please be sure NOT to store the config.cfg file in this repository.

⁠Testing

WIP, coming soon.