fnndsc/pl-orthanc_push repository overview

docker run --rm fnndsc/pl-orthanc_push orthanc_push
    [-f|--inputFileFilter <inputFileFilter>]
    [-o|--orthancUrl <orthancServerUrl>]
    [-u|--username <orthancUserName>]
    [-p|--password <orthancPassword>]
    [-r|--pushToRemote <remoteModality>]
    [-h|--help]
    [--json] [--man] [--meta]
    [--savejson <DIR>]
    [-v|--verbosity <level>]
    [--version]
    <inputDir> <outputDir>

.. code::

    [-f|--inputFileFilter <inputFileFilter>]
    A glob pattern string, default is "**/*.dcm", representing the input
    file pattern to analyze.

    [-o|--orthancUrl <orthancServerUrl>]
    URL of the orthanc server.

    [-u|--username <orthancUserName>]
    The username to login to the orthanc server.

    [-p|--password <orthancPassword>]
    Specify the password to login to the orthanc server.

    [-r|--pushToRemote <remoteModality>]
    If specified, orthanc will send dicoms to the target remote modality

    [-h] [--help]
    If specified, show help message and exit.

    [--json]
    If specified, show json representation of app and exit.

    [--man]
    If specified, print (this) man page and exit.

    [--meta]
    If specified, print plugin meta data and exit.

    [--savejson <DIR>]
    If specified, save json representation file to DIR and exit.

    [-v <level>] [--verbosity <level>]
    Verbosity level for app. Not used currently.

    [--version]
    If specified, print version number and exit.


Getting inline help is:

.. code:: bash

    docker run --rm fnndsc/pl-orthanc_push orthanc_push --man

Run
~~~

You need to specify input and output directories using the `-v` flag to `docker run`.


.. code:: bash

    docker run --rm -u $(id -u)                                 \
        -v $(pwd)/in:/incoming -v $(pwd)/out:/outgoing          \
        fnndsc/pl-orthanc_push orthanc_push                     \
        /incoming /outgoing


Development
-----------

Build the Docker container:

.. code:: bash

    docker build -t local/pl-orthanc_push .

Run unit tests:

.. code:: bash

    docker run --rm local/pl-orthanc_push nosetests

Examples
--------

Put some examples here!


.. image:: https://raw.githubusercontent.com/FNNDSC/cookiecutter-chrisapp/master/doc/assets/badge/light.png
    :target: https://chrisstore.co