fnndsc/pl-s3path repository overview

############### pl-s3path ###############

.. image:: https://img.shields.io/github/tag/fnndsc/pl-s3path.svg?style=flat-square⁠ :target: https://github.com/FNNDSC/pl-s3path⁠ .. image:: https://img.shields.io/docker/build/fnndsc/pl-s3path.svg?style=flat-square⁠ :target: https://hub.docker.com/r/fnndsc/pl-s3path/⁠

⁠Abstract

A CUBE 'ds' plugin to adapt pl-pacsquery output to pl-s3retrieve input.

⁠Preconditions

Input must contain success.txt generated by the pl-pacsquery plugin.

⁠Run

⁠Using docker run

.. code-block:: bash

docker run -t --rm -v $(pwd)/../pl-pacsquery/out:/input
-v $(pwd)/output:/output
fnndsc/pl-s3path s3path.py \ --seriesUIDS 0
/input /output