fomightez/bowtie1 repository overview

Dockerfile⁠

⁠Bowtie1 Dockerized

Docker container for Bowtie1 for splicing-unaware aligning of reads and differential expression analysis for RNA-Seq.

⁠Contents

A Linux-based Docker container with Bowtie version 1.

(This is not Bowtie2; Docker container including Bowtie2 is here⁠ and image here⁠).

Includes:

• Ubuntu base
• Bowtie1

Specific versions and sources are made clear in the Dockerfile⁠.

⁠Use

Intended to be used with data in /data directory.

To pull and run first time.

docker run -v /data:/data -itd fomightez/bowtie1

You may need to change first /data in that command to match path to your directory.

It starts detached and so you need to attach it; alternatively, use docker run -v /data:/data -it fomightez/bowtie1 to start and attach immediately.