fomightez/rnaseqcufflinks repository overview

Dockerfile⁠

⁠Cufflinks Dockerized

A Linux-based Docker container with Cufflinks for Transcriptome assembly and differential expression analysis for RNA-Seq.

⁠Contents

A Linux-based Docker container with Cufflinks.

Includes:

• Ubuntu base
• Cufflinks

Specific versions and sources are made clear in the Dockerfile⁠.

⁠Use

Intended to be used with data in /data directory.

To pull and run first time.

docker run -v /data:/data -itd fomightez/rnaseqcufflinks

You may need to change first /data in that command to match path to your directory.

It starts detached and so you need to attach it; alternatively, use docker run -v /data:/data -it fomightez/rnaseqcufflinks to start and attach immediately.