fredhutch/ls2_r repository overview

⁠Fred Hutch Cancer Research Center

⁠Life Science Software - R Programming Language (ls2_r)

Fred Hutch R container has over 800 R and Bioconductor packages. Details about the ls2 project are available here⁠.

Details about the R builds including the Dockerfile(s), included libraries and instructions can be found here⁠.

Details about the packages included with R can be found at list link: R3.5.0-fh1⁠

⁠How to use the R container

Start the container with interactive R prompt

docker run -ti --rm --name=R3.5.0  fredhutch/ls2_r:3.5.0_fh1 R

Start R container and run an R script. The location of the script needs to be mounted.

docker run -ti --rm  --name=R3.5.0  -v /home/jfdey/src/R:/mnt fredhutch/ls2_r:3.5.0 Rscript /mnt/Pi-test.R