3D de novo assembly (3D DNA) pipeline.

From: https://github.com/aidenlab/3d-dna⁠ Branch: phasing⁠

Tested commands:

• /usr/src/3d-dna/visualize/run-assembly-visualizer.sh (default arguments)
• /usr/src/3d-dna/visualize/juicebox_tools.sh
• /usr/src/3d-dna/run-3ddna-pipeline.sh

Known issues:

• LastZ (https://github.com/lastz/lastz⁠) is missing.